A Student’s Guide to Tropical Marine Biology is written entirely by students …
A Student’s Guide to Tropical Marine Biology is written entirely by students enrolled in the Keene State College Tropical Marine Biology course taught by Dr. Karen Cangialosi. Our goal was to investigate three main aspects of tropical marine biology: understanding the system, identifying problems, and evaluating solutions. Each of the sections contains chapters that utilize openly licensed material and images, and are rich with hyperlinks to other sources. Some of the most pressing tropical marine ecosystem issues are broken up into five sections: Coral Reefs and Diversity, Common Fishes to the Coral Reef, Environmental Threats, Reef Conservation, and Major Marine Phyla. These sections are not mutually exclusive; repetition in some content between chapters is intentional as we expect that users may not read the whole book. This work represents a unique collaborative process with many students across semesters authoring and editing, and therefore reflects the interests and intentions of a broad range of students, not one person’s ideas. This collaboration began with contributions from KSC students in the 2017 semester and includes work from the 2019 class, as well as new content and editorial work from 2017 & 2019 alumni. We look forward to future editions of this book. Enjoy exploring the rainforests of the sea through our collaborative project and please share with those who care!
Students learn about providing healthcare in a global setting and the importance …
Students learn about providing healthcare in a global setting and the importance of wearing protective equipment when treating patients with infectious diseases like Ebola. They learn about biohazard suits, heat transfer through conduction and convection and the engineering design cycle. Student teams design, create and test (and improve) their own Ebola biohazard suit prototypes that cover one arm and hand, including a ventilation system to cool the inside of the suit.
This course will introduce you to a general overview of the biological …
This course will introduce you to a general overview of the biological world. Important concepts will be reinforced and expanded upon through completion of weekly laboratory activities and homework assignments. Upon successful conclusion of the course, students will be able to do the following: Describe the nature of science, including its methods and its limitations; Describe the basic methodology of doing science and the scientific method; Use the scientific method to study everyday situations as well as in laboratory/field investigations; Identify, describe, and explain at a rudimentary level and present examples of, the characteristics common to all living things; Explain that living organisms are composed of molecules which interact in a variety of different chemical reactions necessary to sustain life; Explain that living organisms are comprised of one or more cells and are classified as prokaryotic or eukaryotic based on cellular characteristics; Describe the hereditary information possessed by living and explain how that information determines the cellular characteristics and functions (including basic Mendelian genetics); Explain and describe, with examples, the diversity of life, at different levels (basic molecular to ecological) and how it is hierarchically organized into systems; Explain how evolution by natural selection occurs, and describe the evidence that supports the theory of evolution; and more.
Bacteria survive in almost all environments on Earth, including some considered extremely …
Bacteria survive in almost all environments on Earth, including some considered extremely harsh. From the steaming hot springs of Yellowstone to the frozen tundra of the arctic to the barren deserts of Chile, microbes have been found thriving. Their tenacity to survive in such extreme and varied conditions allows them to play fundamental roles in global nutrient cycling. Microbes also cause a wide range of human diseases and can survive inhospitable conditions found in the human body. In this course, we will examine the molecular systems that bacteria use to adapt to changes in their environment. We will consider stresses commonly encountered, such as starvation, oxidative stress and heat shock, and also discuss how the adaptive responses affect the evolution of the bacteria. This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.
In this course we will discover how innovative technologies combined with profound …
In this course we will discover how innovative technologies combined with profound hypotheses have given rise to our current understanding of neuroscience. We will study both new and classical primary research papers with a focus on the plasticity between synapses in a brain structure called the hippocampus, which is believed to underlie the ability to create and retrieve certain classes of memories. We will discuss the basic electrical properties of neurons and how they fire. We will see how firing properties can change with experience, and we will study the biochemical basis of these changes. We will learn how molecular biology can be used to specifically change the biochemical properties of brain circuits, and we will see how these circuits form a representation of space giving rise to complex behaviors in living animals. A special emphasis will be given to understanding why specific experiments were done and how to design experiments that will answer the questions you have about the brain. This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.
Introduction to axiomatic design. Theoretical basis for rational design. One-FR Design. Multi-FR …
Introduction to axiomatic design. Theoretical basis for rational design. One-FR Design. Multi-FR design. System design. Software design. Product design. Materials and materials process design. Manufacturing system design. Complexities in design: time-independent real complexity, time-independent imaginary complexity, time-dependent combinatorial complexity, and time-dependent periodic complexity. Industrial case studies. This course studies what makes a good design and how one develops a good design. Students consider how the design of engineered systems (such as hardware, software, materials, and manufacturing systems) differ from the "design" of natural systems such as biological systems; discuss complexity and how one makes use of complexity theory to improve design; and discover how one uses axiomatic design theory (AD theory) in design of many different kinds of engineered systems. Questions are analyzed using Axiomatic Design Theory and Complexity Theory. Case studies are presented including the design of machines, tribological systems, materials, manufacturing systems, and recent inventions. Implications of AD and complexity theories on biological systems discussed.
Introduction to quantitative methods and modeling techniques to address key questions in …
Introduction to quantitative methods and modeling techniques to address key questions in modern biology. Overview of quantitative modeling techniques in evolutionary biology, molecular biology and genetics, cell biology and developmental biology. Description of key experiments that validate models. Specific topics include: Evolutionary biology: theoretical models for evolution, evolution in test tube, evolution experiments with viruses and bacteria, complexity and evolution; Molecular biology and genetics: protein design, bioinformatics and genomics, constructing and modeling of genetic networks, control theory and genetic networks; Cell biology: forces and motion, cell motility, signal transduction pathways, chemotaxis and pheromone response; Development biology: pattern formation, self-organization, and models of Drosophila development.
This course covers introductory microbiology from a systems perspective, considering microbial diversity, …
This course covers introductory microbiology from a systems perspective, considering microbial diversity, population dynamics, and genomics. Emphasis is placed on the delicate balance between microbes and humans, and the changes that result in the emergence of infectious diseases and antimicrobial resistance. The case study approach covers such topics as vaccines, toxins, biodefense, and infections including LegionnaireŰŞs disease, tuberculosis, Helicobacter pylori, and plague.
Students learn about water quality testing and basic water treatment processes and …
Students learn about water quality testing and basic water treatment processes and technology options. Biological, physical and chemical treatment processes are addressed, as well as physical and biological water quality testing, including testing for bacteria such as E. coli.
Students experience the engineering design process as they design, fabricate, test and …
Students experience the engineering design process as they design, fabricate, test and redesign their own methods for encapsulation of a (hypothetical) new miracle drug. As if they are engineers, teams make large-size prototypes to test proof of concept. They use household materials (tape, paper towels, plastic wrap, weed-barrier fabric, glues, etc.) to attach a coating to a porous "shell" (a perforated plastic Wiffle® ball) containing the medicine (colored drink mix powder). The objective is to delay the drug release by a certain time and have a long release duration—patterned after the timed release requirements of many real-world pharmaceuticals that are released from a polymer shell via diffusion in the body. Guided by a worksheet, teams go through at least three design/test iterations, aiming to achieve a solution close to the target time release constraints.
Students are introduced to an engineering challenge in which they are given …
Students are introduced to an engineering challenge in which they are given a job assignment to separate three types of apples. However, they are unable to see the color differences between the apples, and as a result, they must think as engineers to design devices that can be used to help them distinguish the apples from one another. Solving the challenge depends on an understanding of wave properties and the biology of sight. After being introduced to the challenge, students form ideas and brainstorm about what background knowledge is required to solve the challenge. A class discussion produces student ideas that can be grouped into broad subject categories: waves and wave properties, light and the electromagnetic spectrum, and the structure of the eye.
How is it that all cells in our body have the same …
How is it that all cells in our body have the same genes, yet cells in different tissues express different genes? A basic notion in biology that most high school students fail to conceptualize is the fact that all cells in the animal or human body contain the same DNA, yet different cells in different tissues express, on the one hand, a set of common genes, and on the other, express another set of genes that vary depending on the type of tissue and the stage of development. In this video lesson, the student will be reminded that genes in a cell/tissue are expressed when certain conditions in the nucleus are met. Interestingly, the system utilized by the cell to ensure tissue specific gene expression is rather simple. Among other factors - all discussed fully in the lesson - the cells make use of a tiny scaffold known as the “Nuclear Matrix or Nucleo-Skeleton”. This video lesson spans 20 minutes and provides 5 exercises for students to work out in groups and in consultation with their classroom teacher. The entire duration of the video demonstration and exercises should take about 45-50 minutes, or equivalent to one classroom session. There are no supplies needed for students’ participation in the provided exercises. They will only need their notebooks and pens. However, the teacher may wish to emulate the demonstrations used in the video lesson by the presenter and in this case simple material can be used as those used in the video. These include play dough, pencils, rubber bands (to construct the nuclear matrix model), a tennis ball and 2-3 Meters worth of shoe laces. The students should be aware of basic information about DNA folding in the nucleus, DNA replication, gene transcription, translation and protein synthesis.
Survey and special topics designed for graduate students in the brain and …
Survey and special topics designed for graduate students in the brain and cognitive sciences. Emphasizes ethological studies of natural behavior patterns and their analysis in laboratory work, with contributions from field biology (mammology, primatology), sociobiology, and comparative psychology. Stresses human behavior but also includes major contributions from studies of other vertebrates and of invertebrates.
This is a seminar based on research literature. Papers covered are selected …
This is a seminar based on research literature. Papers covered are selected to illustrate important problems and approaches in the field of computational and systems biology, and provide students a framework from which to evaluate new developments. The MIT Initiative in Computational and Systems Biology (CSBi) is a campus-wide research and education program that links biology, engineering, and computer science in a multidisciplinary approach to the systematic analysis and modeling of complex biological phenomena. This course is one of a series of core subjects offered through the CSB Ph.D. program, for students with an interest in interdisciplinary training and research in the area of computational and systems biology.
Students carry out independent experimental study under the direction of a member …
Students carry out independent experimental study under the direction of a member of the Biology Department faculty. Subject allows students with a strong interest in independent research to fulfill the project laboratory requirement for the Biology Department Program in the context of a research laboratory at MIT. Written and oral presentation of the research results is required. The permission of the faculty supervisor and the Biology Undergraduate Office must be obtained in advance. Instruction and practice in written and oral communication provided.
Cancer is a leading cause of death worldwide. Cancer involves uncontrolled cell …
Cancer is a leading cause of death worldwide. Cancer involves uncontrolled cell growth, resistance to cell death, failure to differentiate into a particular cell type, and increased cellular motility. A family of gate-keeper genes, known as tumor suppressor genes, plays important roles in preventing the initiation and progression of cancer. Among these, p53 is the most famous. Because of its essential role in maintaining genomic integrity, p53 is often called the guardian of the genome. During this course, we will study how p53 serves as a pivotal tumor suppressor gene in preventing cancer.This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.
This laboratory manual is intended for use in a biology laboratory course …
This laboratory manual is intended for use in a biology laboratory course taken by non-science majors, pre-biology, and pre-allied health majors.
Laboratory exercises provide students with experience in basic laboratory skills, gathering and organizing data, measuring and calculating, hypothesis testing, analysis of data, writing, and laboratory safety. The skill sets are designed to promote the development of critical thought and analysis. Students work with living and preserved specimens, and laboratory reagents and equipment.
it would be ideal if students already have learned that DNA is …
it would be ideal if students already have learned that DNA is the genetic material, and that DNA is made up of As, Ts, Gs, and Cs. It also would help if students already know that each human has two versions of every piece of DNA in their genome, one from mom and one from dad. The lesson will take about one class period, with roughly 30 minutes of footage and 30 minutes of activities.
Students learn about homeostasis and create models by constructing simple feedback systems …
Students learn about homeostasis and create models by constructing simple feedback systems using Arduino boards, temperature sensors, LEDs and Arduino code. Starting with pre-written code, students instruct LEDs to activate in response to the sensor detecting a certain temperature range. They determine appropriate temperature ranges and alter the code accordingly. When the temperature range is exceeded, a fan is engaged in order to achieve a cooling effect. In this way, the principle of homeostasis is demonstrated. To conclude, students write summary paragraphs relating their models to biological homeostasis.
How do scientists discover the basic biology underlying human diseases? Simple organisms …
How do scientists discover the basic biology underlying human diseases? Simple organisms such as baker's yeast, nematodes, fruit flies, zebrafish, mice and rats have allowed biologists to investigate disease at multiple levels, from molecules to behavior. In this course students will learn strategies of disease modeling by critically reading and discussing primary research articles. We will explore current models of neurodegenerative diseases such as Parkinson's disease, childhood genetic diseases such as Fragile X syndrome, as well as models of deafness and wound healing. Our goal will be to understand the strategies biologists use to build appropriate models of human disease and to appreciate both the power and limitations of using simple organisms to analyze human disease. This course is one of many Advanced Undergraduate Seminars offered by the Biology Department at MIT. These seminars are tailored for students with an interest in using primary research literature to discuss and learn about current biological research in a highly interactive setting. Many instructors of the Advanced Undergraduate Seminars are postdoctoral scientists with a strong interest in teaching.
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